Does it have anything to do with Atlas Shrugged?
No, the novels are not linked.
Atlas in this novel refers to the Atlas mountains whereas in Atlas shrugged Atlas refers to Greek mythology. In Greek mythology Atlas is the titan that is holding up the heavens.
The Atlas Maneuver is a (spy) thriller where as Atlas shrugged is a dystopian novel like 1984, Brave New World, Fahrenheit 451 etc.
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